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ZooRisk - Quantitative Assessment of Zoonotic Disease Risk

Provides quantitative tools for assessing zoonotic disease risk across animal, human, environmental, and transmission interfaces. The package supports exposure and transmission risk estimation, spillover risk assessment, risk scoring, cross-species comparison, transmission-network analysis, Monte Carlo uncertainty simulation, and sensitivity analysis. The One Health framework underlying these assessments is described by World Health Organization, Food and Agriculture Organization of the United Nations, United Nations Environment Programme, and World Organisation for Animal Health (2022) <doi:10.4060/cc2289en>.

Last updated

2.70 score

AutoViz - Automated Data Visualization and Exploratory Dashboarding

Provides automated exploratory data analysis, visualization recommendation, summary statistics, missing-value assessment, outlier screening, and HTML dashboard generation for rectangular data. The package automatically identifies variable types and common analytical relationships and recommends appropriate visualization methods based on data structure, cardinality, and analytical objectives. It provides a transparent, reproducible workflow for data profiling and visualization that can be used independently or as a component within interactive applications.

Last updated

2.70 score

BioMixModel - Mixed Models for Biological, Clustered and Longitudinal Data

Tools for fitting and interpreting mixed-effects models for clustered, longitudinal and heterogeneous biological data. Provides variance partitioning, intraclass correlation, penalized likelihood summaries, a heterogeneous-data information criterion, model comparison, diagnostics, and ensemble-style summaries for multilevel data. The package is designed as a complementary, interpretable workflow around established mixed-model methods.

Last updated

2.70 score

CausalLoopAnalytics - Data-Driven Causal Loop and Feedback Network Analysis

Provides tools for constructing signed causal-loop models, discovering directed causal relationships from time-series data using Granger-style tests, identifying and classifying reinforcing and balancing feedback loops, quantifying loop strength, assessing loop stability by bootstrap resampling, calculating network centrality and leverage-point scores, comparing causal-loop models, and producing publication-ready base R visualizations and summaries. The package is domain-agnostic and can be used in human medicine, veterinary medicine, agriculture, epidemiology, ecology, public health, and One Health. Methods are based on Granger (1969) <doi:10.2307/1912791> and Efron (1979) <doi:10.1214/aos/1176344552>.

Last updated

1.70 score

TrialFlowR - Clinical Trial Flow and Participant Disposition

Summarizes participant flow and disposition in clinical trials, including CONSORT-style randomized controlled trials, parallel-group, crossover, cluster randomized, and multi-arm trials. Provides functions for screening failures, exclusions and reasons, allocation, follow-up, loss to follow-up, withdrawals, intention-to-treat and per-protocol populations, and participant-disposition summaries. The methods are based on established principles for reporting participant flow and disposition in randomized trials; see Schulz et al. (2010) <doi:10.1136/bmj.c332>.

Last updated

1.00 score

DataAudit - Comprehensive Data Quality Auditing and Validation

Provides tools for systematic assessment, validation, and reporting of data quality. The package detects common data-quality problems including missing or blank values, duplicate observations, infinite values, constant and near-zero variance variables, outliers, invalid ranges and categories, type and pattern violations, problematic dates and identifiers, sequence errors, dependency violations, and cross-variable inconsistencies. It also supports reusable validation rules, integrated audit reports, and standardized data-quality scoring for reproducible data-quality assessment workflows.

Last updated

4.18 score 3 stars 186 downloads

EpiLossR - Economic Loss Estimation for Animal Disease Mortality and Morbidity

Provides standardized tools for estimating direct economic losses associated with mortality and morbidity in animal diseases. The package implements reproducible methods for calculating mortality- and morbidity-related losses using a common S3 object framework with methods for summarization, visualization, and data export. It is intended for veterinary epidemiologists, animal health economists, veterinarians, researchers, and students.

Last updated

3.00 score 257 downloads

AutoEDA - Automatic Exploratory Data Analysis

Automatically performs exploratory data analysis, including data summaries, missing value analysis, descriptive statistics, visualizations, correlation analysis, outlier detection, and report generation.

Last updated

3.00 score 1 stars 6 scripts 515 downloads

ExpDesignR - Experimental Design and Randomization Methods for Biomedical and Veterinary Research

Provides functions for generating randomized experimental designs for biomedical, veterinary, agricultural, and clinical research. The package includes functions for simple randomization, block randomization, stratified randomization, cluster randomization, Latin square designs, crossover designs, allocation summaries, schedule export, and visualization of treatment allocations.

Last updated

2.70 score 1 stars 392 downloads

EconEvalR - Economic Evaluation Methods for Cost-Benefit, Partial Budgeting, and Cost-Effectiveness Analyses

Provides functions for economic evaluation, including Cost-Benefit Analysis (CBA), Benefit-Cost Ratio (BCR), Net Present Value (NPV), Internal Rate of Return (IRR), Partial Budgeting, Budget Impact Analysis (BIA), Cost-Effectiveness Analysis (CEA), Decision Tree Analysis, Sensitivity Analysis, and Probabilistic Sensitivity Analysis. The package produces summaries, graphical displays, and reproducible workflows for applications in veterinary science, agriculture, public health, epidemiology, health economics, and related fields.

Last updated

2.00 score

inferstat - Publication-Ready Inferential Statistics and Visualization

Provides publication-ready tools for inferential statistical analyses, assumption checking, effect size estimation, statistical visualizations, and standardized reporting. Methods for assessing normality follow Shapiro and Wilk (1965) <doi:10.1093/biomet/52.3-4.591>, and guidance for standardized effect sizes is informed by Cohen (1988) <doi:10.4324/9780203771587>.

Last updated

1.70 score 234 downloads

OutbreakR - Epidemiological Tools for Outbreak Investigation and Analysis

Provides tools for epidemiological analysis of disease outbreaks, including measures of disease frequency, association, impact, transmission, and vaccine effectiveness. Functions support prevalence, incidence, attack rates, mortality, case fatality, risk ratios, odds ratios, rate ratios, attributable measures, reproduction numbers, herd immunity thresholds, contingency tables, grouped analyses, and outbreak line-list validation.

Last updated

1.00 score 229 downloads

EpiQuestionR - Questionnaire Analysis for Epidemiology, One Health, Public Health, Veterinary and Medical Research

Comprehensive toolkit for questionnaire scoring, psychometric validation, reliability assessment, epidemiological survey analysis, KAP studies, One Health research, structural equation modelling, item response theory, GIS visualization, dashboards and automated reporting.

Last updated

2.00 score 1 stars 542 downloads